Exon 30 that results in substitution of amino acids in the catalytic site of DNA polymerase f, i.e., D2781A/D2783A (Fig. 7B). Screening 23 hygromycin-resistant clones for REV3Lknockout cells resulted in 7 targeted clones, where the exon 5 was replaced 22948146 with the drug-resistance gene. Therefore, the targeting efficiency was about 30 ( = 7/23) in Nalm-6-MSH+ cells. This value was similar to that in the original Nalm-6-MSH- cells, i.e., 25 = 9 targeted clones/36 hygromycin-resistant clones. Similarly, we obtained 5 targeted clones out of 24 hygromycin-resistant clones for REV3L-knock-in cells in Nalm-6-MSH+ cells. Thus, the targeting efficiency was 21 . Two out of five targeted clones had NarI restriction site, which was tracer for alteration of chromosome sequence (Fig. 8 B). This efficiency was similar to that in the original Nalm-6 cells, where 18 positive clones were obtained out of 68 hygromycin-resistant clones. The targeting efficiency was 26 ( = 18/68) in the original Nalm-6 cells. Nine out 18 targeted clones had NarI-sensitive sites. Transcription of knockout and Autophagy catalytically dead form of REV3L was analyzed by RT-PCR and DNA sequencing (Fig. 8A, C). The short cDNA was detected in heterogeneous knockout clone (Fig. 8A). This result shows that the knockout clone transcribed short mRNA without exon 5. The cDNA sequence of the knock-in clone was a mosaic sequence of the wild-type and the catalytically dead mutant, indicating that the knock-in allele was transcribed. (Fig. 7C). These results clearly indicate that Nalm-6-MSH+ cells can be employed to efficiently disrupt or alter genome sequences in human cells.Establishment of Human Cell Line Nalm-6-MSH+wanted to establish human cells where either DNA polymerase f is 
not expressed (knockout cells) or catalytically-inactive DNA polymerase f is expressed (knock-in cells). As the initial approach, we replaced one allele of Nalm-6-MSH+ with targeting vectors for gene knockout and knock-in. For comparison, we also established the same mutants with the original Nalm-6, which is MSH-. As results, both Nalm-6 cell lines exhibited similar high targeting efficiencies for gene knockout and knock-in, i.e., 20 to 25 . These results suggest that Nalm-6-MSH+ cells can be utilized for gene targeting including introduction of small Epigenetic Reader Domain numbers of base substitutions (knock-in) of human genes. In summary, we have restored MSH expression in Nalm-6 cell and demonstrated that the mismatch repair functions did not affect high 15755315 gene targeting efficiencies of the cell line (Fig. 9). The established Nalm-6-MSH+ cells are appropriate for functional analyses of human genes in particular involved in mutagenesis, DNA repair and DNA damage responses. In addition, we demonstrated that not only gene knockout cells but also knockin mutant cells could be generated by alteration of genome sequences with the cell line. We expect that knock-in strategy willbe powerful new tools for studying how gene mutations and variants contribute to susceptibility to diseases and affect responses to therapeutic agents in human cells. The establishment of knockin mutant cells by amino acid substitutions of target genes enables to analyze precise roles of amino acid sequences in the activity and protein-protein interactions, and effects of SNPs found in cancer cells.Supporting InformationTable S1 A list of PCR primers.(DOC)Method SConstruction of pENTR mloxP-Hyg vector.(DOC)Author ContributionsConceived and designed the experiments: TS TN. P.Exon 30 that results in substitution of amino acids in the catalytic site of DNA polymerase f, i.e., D2781A/D2783A (Fig. 7B). Screening 23 hygromycin-resistant clones for REV3Lknockout cells resulted in 7 targeted clones, where the exon 5 was replaced 22948146 with the drug-resistance gene. Therefore, the targeting efficiency was about 30 ( = 7/23) in Nalm-6-MSH+ cells. This value was similar to that in the original Nalm-6-MSH- cells, i.e., 25 = 9 targeted clones/36 hygromycin-resistant clones. Similarly, we obtained 5 targeted clones out of 24 hygromycin-resistant clones for REV3L-knock-in cells in Nalm-6-MSH+ cells. Thus, the targeting efficiency was 21 . Two out of five targeted clones had NarI restriction site, which was tracer for alteration of chromosome sequence (Fig. 8 B). This efficiency was similar to that in the original Nalm-6 cells, where 18 positive clones were obtained out of 68 hygromycin-resistant clones. The targeting efficiency was 26 ( = 18/68) in the original Nalm-6 cells. Nine out 18 targeted clones had NarI-sensitive sites. Transcription of knockout and catalytically dead form of REV3L was analyzed by RT-PCR and DNA sequencing (Fig. 8A, C). The short cDNA was detected in heterogeneous knockout clone (Fig. 8A). This result shows that the knockout clone transcribed short mRNA without exon 5. The cDNA sequence of the knock-in clone was a mosaic sequence of the wild-type and the catalytically dead mutant, indicating that the knock-in allele was transcribed. (Fig. 7C). These results clearly indicate that Nalm-6-MSH+ cells can be employed to efficiently disrupt or alter genome sequences in human cells.Establishment 
of Human Cell Line Nalm-6-MSH+wanted to establish human cells where either DNA polymerase f is not expressed (knockout cells) or catalytically-inactive DNA polymerase f is expressed (knock-in cells). As the initial approach, we replaced one allele of Nalm-6-MSH+ with targeting vectors for gene knockout and knock-in. For comparison, we also established the same mutants with the original Nalm-6, which is MSH-. As results, both Nalm-6 cell lines exhibited similar high targeting efficiencies for gene knockout and knock-in, i.e., 20 to 25 . These results suggest that Nalm-6-MSH+ cells can be utilized for gene targeting including introduction of small numbers of base substitutions (knock-in) of human genes. In summary, we have restored MSH expression in Nalm-6 cell and demonstrated that the mismatch repair functions did not affect high 15755315 gene targeting efficiencies of the cell line (Fig. 9). The established Nalm-6-MSH+ cells are appropriate for functional analyses of human genes in particular involved in mutagenesis, DNA repair and DNA damage responses. In addition, we demonstrated that not only gene knockout cells but also knockin mutant cells could be generated by alteration of genome sequences with the cell line. We expect that knock-in strategy willbe powerful new tools for studying how gene mutations and variants contribute to susceptibility to diseases and affect responses to therapeutic agents in human cells. The establishment of knockin mutant cells by amino acid substitutions of target genes enables to analyze precise roles of amino acid sequences in the activity and protein-protein interactions, and effects of SNPs found in cancer cells.Supporting InformationTable S1 A list of PCR primers.(DOC)Method SConstruction of pENTR mloxP-Hyg vector.(DOC)Author ContributionsConceived and designed the experiments: TS TN. P.
