Picin Tetracycline VancomycinaAntibioticIntermediate resistant susceptible ND 2 ND 2 2 5 5 1 1 ND ND 4 0.125 4 4 10 10 2 2 ND100 1 ND 1 1 2.5 2.5 0.125 0.125ND, not determined. doi:10.1371/journal.pone.Autophagy 0060460.tExpression of blaA in S. oneidensisFigure 2. Pellicle formation of S. oneidensis in the presence of b-lactam antibiotics. (A) Inhibitory effects on pellicle formation were found with ampicillin and penicillin (Pen), but not carbenicillin (Carb). (B) Pellicle formation in LB broth containing ampicillin prepared by double dilution. Pellicle formation was inhibited by ampicillin at concentrations ranging from 0.49 to 6.25 mg/ml. doi:10.1371/journal.pone.0060460.gDacA(PBP5) influences expression of BlaA in S. oneidensisPBPs are primary targets of b-lactam antibiotics and some of them are essential. It has been proposed that functionally redundant LMW PBPs, particularly PBP5 which is the most abundant, may behave as ‘b-lactam traps’ to protect essential ones [8]. According to the genome annotation, S. oneidensis has at least three LMW PBPs: DacB (SO2394, PBP4), DacA-1 (SO1164, PBP5), and PbpG (SO0999, PBP7). While DacB is predicted to be a bifunctional (DD-CPase and endopeptidase) enzyme, both DacA and PbpG are mono-functional (DD-CPase and endopeptidase, respectively). Given that the genome encodes only one PBP5, we renamed the gene dacA-1 as dacA. 
Using the plate sensitivity assay, we found that removal of dacA Epigenetic Reader Domain resulted in increased susceptibility to ampicillin, consistent with findings in E. coli [8] (Fig. 6A, Table 2). Moreover, growth of the DdacA strain was sensitive to ampicillin even at 0.125 mg/ml and required a much 
longer time to resume growth with higher concentrations of ampicillin (Fig. 6B). In contrast, loss of dacB and pbpG did not result in a noticeable phenotypic change compared to the wild type (Fig. 6A). While a comprehensive investigation of all of the possible roles that PBP5 plays was not undertaken as part of this study, we intended to determine whether PBP5 influenced expression of blaA. To this end, we measured the expression of the PblaA-lacZ fusion in the DdacA strain as well as in strains devoid of one of the other LMW PBPs in the absence and presence of ampicillin (Fig. 6C). Deletion of dacB (PBP4) and pbpG (PBP7) resulted in expression of blaA that was comparable to the wild type under all conditions. In the case of the DdacA strain (PBP5), however, activity of PblaA was induced by ampicillin at 2.5 mg/ml, producing b-galactosidase two to three times higher than in the wild type. Additionally, PblaA activity in the absence of ampicillin, albeit low, was higher than in the wild type, DdacB (PBP4) or DpbpG (PBP7) strains indicating that the lack of PBP5 enhanced transcription of blaA under these conditions. Surprisingly, in the presence of50 mg/ml ampicillin, PblaA activity was about 50 of the wild type suggesting that the loss of PBP5 compromises induction of the blaA gene at the higher concentrations. While this observation supports the extended time for growth recovery of the DdacA strain in the presence of 50 mg/ml ampicillin (Fig. 6B), the underlying mechanism remains to be determined.DiscussionShewanella contain a reservoir of antibiotic resistance determinants, especially for b-lactam antibiotics [25,33?6]. In particular, S. oneidensis possesses seven genes predicted to encode blactamases, including BlaA, also named as OXA-54, an Ambler class D b-lactamase [25,37]. BlaA, along with two analogues in.Picin Tetracycline VancomycinaAntibioticIntermediate resistant susceptible ND 2 ND 2 2 5 5 1 1 ND ND 4 0.125 4 4 10 10 2 2 ND100 1 ND 1 1 2.5 2.5 0.125 0.125ND, not determined. doi:10.1371/journal.pone.0060460.tExpression of blaA in S. oneidensisFigure 2. Pellicle formation of S. oneidensis in the presence of b-lactam antibiotics. (A) Inhibitory effects on pellicle formation were found with ampicillin and penicillin (Pen), but not carbenicillin (Carb). (B) Pellicle formation in LB broth containing ampicillin prepared by double dilution. Pellicle formation was inhibited by ampicillin at concentrations ranging from 0.49 to 6.25 mg/ml. doi:10.1371/journal.pone.0060460.gDacA(PBP5) influences expression of BlaA in S. oneidensisPBPs are primary targets of b-lactam antibiotics and some of them are essential. It has been proposed that functionally redundant LMW PBPs, particularly PBP5 which is the most abundant, may behave as ‘b-lactam traps’ to protect essential ones [8]. According to the genome annotation, S. oneidensis has at least three LMW PBPs: DacB (SO2394, PBP4), DacA-1 (SO1164, PBP5), and PbpG (SO0999, PBP7). While DacB is predicted to be a bifunctional (DD-CPase and endopeptidase) enzyme, both DacA and PbpG are mono-functional (DD-CPase and endopeptidase, respectively). Given that the genome encodes only one PBP5, we renamed the gene dacA-1 as dacA. Using the plate sensitivity assay, we found that removal of dacA resulted in increased susceptibility to ampicillin, consistent with findings in E. coli [8] (Fig. 6A, Table 2). Moreover, growth of the DdacA strain was sensitive to ampicillin even at 0.125 mg/ml and required a much longer time to resume growth with higher concentrations of ampicillin (Fig. 6B). In contrast, loss of dacB and pbpG did not result in a noticeable phenotypic change compared to the wild type (Fig. 6A). While a comprehensive investigation of all of the possible roles that PBP5 plays was not undertaken as part of this study, we intended to determine whether PBP5 influenced expression of blaA. To this end, we measured the expression of the PblaA-lacZ fusion in the DdacA strain as well as in strains devoid of one of the other LMW PBPs in the absence and presence of ampicillin (Fig. 6C). Deletion of dacB (PBP4) and pbpG (PBP7) resulted in expression of blaA that was comparable to the wild type under all conditions. In the case of the DdacA strain (PBP5), however, activity of PblaA was induced by ampicillin at 2.5 mg/ml, producing b-galactosidase two to three times higher than in the wild type. Additionally, PblaA activity in the absence of ampicillin, albeit low, was higher than in the wild type, DdacB (PBP4) or DpbpG (PBP7) strains indicating that the lack of PBP5 enhanced transcription of blaA under these conditions. Surprisingly, in the presence of50 mg/ml ampicillin, PblaA activity was about 50 of the wild type suggesting that the loss of PBP5 compromises induction of the blaA gene at the higher concentrations. While this observation supports the extended time for growth recovery of the DdacA strain in the presence of 50 mg/ml ampicillin (Fig. 6B), the underlying mechanism remains to be determined.DiscussionShewanella contain a reservoir of antibiotic resistance determinants, especially for b-lactam antibiotics [25,33?6]. In particular, S. oneidensis possesses seven genes predicted to encode blactamases, including BlaA, also named as OXA-54, an Ambler class D b-lactamase [25,37]. BlaA, along with two analogues in.
