Or all qRT-PCR reactions n = 3/sample. Using inter-experimental variations CD90 transcript could be calculated by normalisation to the ubiquitously expressed b-actin reference gene based on standard threshold cycle (CT) analysis: 2?DCTsample ?DCTcontrol) where DCT = CT gene of interest-CT reference gene.Results Rat SVF characterisation and capture antigen selectionPrior to cell isolation SVF was characterised using a panel of surface antigens (CD90, CD29, CD44, CD45 and CD31) which validated CD90+ as the most appropriate target for adSC isolation from this tissue. Flow cytometry allowed conclusion that of the antigens analysed, CD90 was the most abundant ranging between 5?0 of total SVF cells, n = 7 (inter-animal repeats) (Fig. 1). It was also found that the percentage of CD90+ adSCs in SVF did not vary as a function of anatomical origin of the source material, with inter-abdominal and subcutaneous adipose yielding identical adSC (CD90+) concentrations.CD90+ isolation: protein A-coated beads (non-reversible JW 74 antibody binding)Initial experiments utilised protein A-coated beads (50?00 mm) to deplete CD90+ cells from SVF. Before cell isolation, loading of CD90 antibody onto beads was confirmed by exploiting the antibodies FITC conjugation to visualise antibodies co-localised with beads using fluorescent microscopy (Fig. 2). Flow cytometric analysis after cell/bead interaction concluded that labelling/loading of both cells and beads with antibody provided the greatest CD90+ depletion and that the antibody concentration used to load the beads could be considerably reduced without compromising CD90+ cell depletion. A mean depletion of 80 was recorded when cells were pre-labelled with 1 mg antibody/105 cells and beads loaded with a very low antibody concentration; 0.001 mg (Fig. 3). To further confirm CD90+ capture, RNA was isolated from both components of the capture reaction; beads and surrounding capture supernatents, and qRTPCR performed to compare CD90 presence relative to a negative control capture in which no antibody was added to the system. This demonstrated that cells bound to the bead surface expressed CD90 while the contrary was true of the cells which remained unassociated with beads in the surrounding 58-49-1 site reaction supernatant. This showed that CD90+ cells in the reaction mixture were associated with the bead surface post CD90 targeted cell/bead interaction (Fig. 4).Primer designCoding strand cDNA sequences (CDS) of genes of interest were identified using the genome search platform www.ncbi.nlm.nih. gov. The CDS sequence was copied into the primer design platform, Beacon Designer V.7.21 (Premier Biosoft International, USA). Amplicons of 75?00 bp were selected for optimal compliance with SYBR green chemistry, along with low guanine-cytosine (GC) content and an annealing temperature of 55.0+/25.0uC. In addition, all primers were designed between 18?4 bp in length. The proposed primers were verified for tertiary structures using the DNA mfold server provided by M. Zuker at http://frontend.bioinfo.rpi.edu/applications/mfold/cgibin/dna-form1.cgi. Primers that formed complex hairpin loops at the annealing temperature identified by the primer design platform were discarded as it was unlikely that they would anneal correctly.A Novel Technology for Cell Capture and ReleaseFigure 1. Flow cytometric characterisation of rat primary adipose. A: SVF Characterisation. Error bars represent 1 standard deviation from the mean, n = 7 (inter-animal repe.Or all qRT-PCR reactions n = 3/sample. Using inter-experimental variations CD90 transcript could be calculated by normalisation to the ubiquitously expressed b-actin reference gene based on standard threshold cycle (CT) analysis: 2?DCTsample ?DCTcontrol) where DCT = CT gene of interest-CT reference gene.Results Rat SVF characterisation and capture antigen selectionPrior to cell isolation SVF was characterised using a panel of surface antigens (CD90, CD29, CD44, CD45 and CD31) which validated CD90+ as the most appropriate target for adSC isolation from this tissue. Flow cytometry allowed conclusion that of the antigens analysed, CD90 was the most abundant ranging between 5?0 of total SVF cells, n = 7 (inter-animal repeats) (Fig. 1). It was also found that the percentage of CD90+ adSCs in SVF did not vary as a function of anatomical origin of the source material, with inter-abdominal and subcutaneous adipose yielding identical adSC (CD90+) concentrations.CD90+ isolation: protein A-coated beads (non-reversible antibody binding)Initial experiments utilised protein A-coated beads (50?00 mm) to deplete CD90+ cells from SVF. Before cell isolation, loading of CD90 antibody onto beads was confirmed by exploiting the antibodies FITC conjugation to visualise antibodies co-localised with beads using fluorescent microscopy (Fig. 2). Flow cytometric analysis after cell/bead interaction concluded that labelling/loading of both cells and beads with antibody provided the greatest CD90+ depletion and that the antibody concentration used to load the beads could be considerably reduced without compromising CD90+ cell depletion. A mean depletion of 80 was recorded when cells were pre-labelled with 1 mg antibody/105 cells and beads loaded with a very low antibody concentration; 0.001 mg (Fig. 3). To further confirm CD90+ capture, RNA was isolated from both components of the capture reaction; beads and surrounding capture supernatents, and qRTPCR performed to compare CD90 presence relative to a negative control capture in which no antibody was added to the system. This demonstrated that cells bound to the bead surface expressed CD90 while the contrary was true of the cells which remained unassociated with beads in the surrounding reaction supernatant. This showed that CD90+ cells in the reaction mixture were associated with the bead surface post CD90 targeted cell/bead interaction (Fig. 4).Primer designCoding strand cDNA sequences (CDS) of genes of interest were identified using the genome search platform www.ncbi.nlm.nih. gov. The CDS sequence was copied into the primer design platform, Beacon Designer V.7.21 (Premier Biosoft International, USA). Amplicons of 75?00 bp were selected for optimal compliance with SYBR green chemistry, along with low guanine-cytosine (GC) content and an annealing temperature of 55.0+/25.0uC. In addition, all primers were designed between 18?4 bp in length. The proposed primers were verified for tertiary structures using the DNA mfold server provided by M. Zuker at http://frontend.bioinfo.rpi.edu/applications/mfold/cgibin/dna-form1.cgi. Primers that formed complex hairpin loops at the annealing temperature identified by the primer design platform were discarded as it was unlikely that they would anneal correctly.A Novel Technology for Cell Capture and ReleaseFigure 1. Flow cytometric characterisation of rat primary adipose. A: SVF Characterisation. Error bars represent 1 standard deviation from the mean, n = 7 (inter-animal repe.
